Welcome to BioTextQuest version 2.0!

BioTextQuest is a tool to help you discover novel concepts in biomedical literature.

It accepts a PubMed or an OMIM query. In the case of OMIM, either the OMIM text will be processed or the PubMed articles referenced in the OMIM text (OMIM references). The collected articles or text are then clustered in meaningfull clusters. The most important terms of each cluster are presented in a tag cloud format and enriched by exterior services.

You start your analysis by selecting the Start tab

From the following dropdown menu you can select your theme:

Choose a theme

Parameters of the Analysis

Query

Advanced parameters

If you want to use the old version of BioTextQuest please follow the link

Use terms from database:

Extract Pubmed

Choose extract entities:

Remove common word suffixes (Stemming)

Similarity matrix:

Clustering algorithm:

Results of the Analysis

Wordcloud divided into clusters

Total words in cloud

Select Entity Types:

Genes/Proteins of a specific organism